關於 scenic single-cell ，我們在網路上蒐集到這些相關的討論、資訊與評價

#11. The SCENIC workflow (a) In the first step, co-expression ...

We present SCENIC for the simultaneous reconstruction of gene regulatory networks and identification of cell states. We apply SCENIC to a compendium of single- ...

#12. Robustness and applicability of transcription factor and ...

... against the tools SCENIC/AUCell and metaVIPER, designed for scRNA-seq. For the in silico study, we simulate single cells from TF/pathway ...

#13. Functional inference of gene regulation using single-cell multi ...

modeling-gene regulatory dynamics among single cells. ... (2017). SCENIC: single-cell regulatory network inference and clustering.

#14. IReNA: Integrated regulatory network analysis of single-cell ...

Using single-cell transcriptomes, the SCENIC software combined GENIE3 and Rcistarget separately for network inference and identification of key ...

#15. aertslab/SCENIC - GitHub - RDRR.io

aertslab/SCENIC: SCENIC (Single Cell rEgulatory Network Inference and Clustering) ; Bioconductor views, SingleCell ; Maintainer, Sara Aibar <sara.

#16. SCENIC: Single-cell regulatory network inference and clustering ...

Single -cell RNA-seq allows building cell atlases of any given tissue and infer the dynamics of cellular state transitions during developmental or disease ...

#17. A scalable SCENIC workflow for single-cell gene ... - Lirias

SCENIC reconstructs regulons, i.e. transcription factors and their target genes, assesses the activity of these discovered regulons in the individual cells, and ...

#18. SCENIC - Bioinformatics Home

An R pipeline for inference of gene regulatory networks and identification of cell states in RNA-seq data sets. The SCENIC (Single-Cell rEgulatory Network ...

#19. SIGNET: single-cell RNA-seq-based gene regulatory network ...

SCENIC [9] combines a random forest model used to predict transcription factor (TF)-gene pairs with regulatory sequence analysis to ...

#20. Identification of genomic enhancers through spatial integration ...

larly, single-cell transcriptomics allow measuring gene expression in ... Next, we used SCENIC (Single-Cell rEgulatory Network Inference.

#21. Revealing key regulators of neutrophil function during ... - PLOS

Recent data from single cell RNA sequencing (scRNA-seq) studies ... (C) SCENIC results for neutrophil transcriptional regulatory networks.

#22. 2019-06-27 scenic: single-cell regulatory network inference ...

title：scenic: single-cell regulatory network inference and clustering journal：Nature me...

#23. A scalable SCENIC workflow for single-cell ... - RNA-Seq Blog

This protocol explains how to perform a fast SCENIC analysis alongside standard best practices steps on single-cell RNA-sequencing data ...

#24. single-cell regulatory network inference and clustering (SCENIC ...

A Search Service for Abbreviation / Long Form. □ Abbreviation / Long Form : SCENIC / single-cell regulatory network inference and clustering ...

#25. Predicting gene regulatory networks from cell atlases

We re-performed the SCENIC framework on pseudobulk cells across the integrated atlas, projected individual cells on UMAP based on RAS, coloured ...

#26. Single cell gene regulatory networks in plants: Opportunities ...

Because gene regulation occurs principally within single cells, ... Single-Cell Regulatory Network Inference and Clustering (SCENIC) uses a ...

#27. AUCell - Bioconductor

AUCell: Analysis of 'gene set' activity in single-cell RNA-seq data (e.g. identify ... “SCENIC: Single-Cell Regulatory Network Inference And Clustering.

#28. Gene regulatory network analysis in single cells - Sara Aibar

Gene regulatory network analysis in single cells - Sara Aibar - RegGen - ISMB/ECCB 2017.

#29. Single cell gene regulatory networks in plants - ScienceOpen

SCENIC uses a random forest clustering algorithm to identify target genes that are co-expressed with transcription factors. It then filters the ...

#30. SCENIC: single-cell regulatory network inference and clustering.

We present SCENIC, a computational method for simultaneous gene regulatory network reconstruction and cell-sta | Sara Aibar, Carmen Bravo ...

#31. aertslab/pyscenic - Docker Image

pySCENIC is a lightning-fast python implementation of the SCENIC pipeline. ... gene regulatory networks and cell types from single-cell RNA-seq data.

#32. Inferring gene regulation from stochastic transcriptional ...

In this paper, we demonstrate how stochastic fluctuations across individual cells in a single cell state can give rise to time-shifted covariation between the ...

#33. Gene regulatory network inference from single-cell data using ...

bursty nature of gene expression revealed at single-cell level. ... J. Aerts, and et al., “SCENIC: single-cell regulatory network inference.

#34. A Bayesian inference transcription factor activity model for the ...

Single -cell RNA sequencing (scRNA-seq) has emerged as a powerful ... RELB target genes predicted by SCENIC were enriched for RNA or DNA ...

#35. SCENIC: single-cell regulatory network inference and ... - 梅斯医学

SCENIC : single-cell regulatory network inference and clustering. Aibar, S; Gonzalez-Blas, CB; Moerman, T; Van, AHT; Imrichova, H; Hulselmans, G; Rambow, F; ...

#36. FlyBase:ScRNA-Seq

1 Popular Resource Categories; 2 Single Cell RNA-seq Data Portals ... SCENIC Python package, SCENIC infers Gene Regulatory Networks and cell ...

#37. Integrated single-cell transcriptomic analyses reveal that ...

We systematically analyzed GBM single-cell RNA sequencing (scRNA-seq), ... in different tumor subsets were identified using SCENIC package.

#38. Gene regulatory network reconstruction using single-cell RNA ...

Single -cell RNA sequencing (scRNAseq) captures the gene expression state of thousands of individual cells in a single experiment, ...

#39. 以single-cell RNA-seq数据推断基因调控网络和细胞功能聚类

2017年发表在Nature Methods杂志上的SCENIC算法，利用单细胞RNA-seq数据，同时进行基因调控网络重建和细胞状态鉴定，应用于肿瘤和小鼠大脑单细胞图谱数据 ...

#40. ‪Sara Aibar‬ - ‪Google Scholar‬

SCENIC : single-cell regulatory network inference and clustering. SA Sara Aibar, Carmen Bravo González-Blas, Thomas Moerman, Vân Anh Huynh-Thu .

#41. SCope - FLY CELL ATLAS

scenic -v2 - Data from: SCENIC+: single-cell multiomic inference of enhancers and gene regulatory networks, Bravo González-Blas and De Winter ...

#42. Dynamic single-cell RNA sequencing identifies ... - JCI

Dynamic single-cell RNA sequencing identifies immunotherapy persister cells following PD-1 blockade. Kartik Sehgal, 1,2 Andrew Portell, 1,3 Elena V. Ivanova, 1 ...

#43. 【SCENIC】Single Cell rEgulatory Network Inference ... - CSDN

【SCENIC】Single Cell rEgulatory Network Inference and Clustering. VIP文章 DerekRusso 于 2022-04-16 16:29:56 发布 1063 收藏 1. 分类专栏： Gene Regulatory ...

#44. Single-Cell Transcriptomics Reveals Core Regulatory ... - MDPI

SCENIC Analysis. Log-normalized UMI counts were used as the input gene expression values for SCENIC analysis [21]. First, the potential target ...

#45. Single-Cell RNA Sequencing to Dissect the Immunological ...

SCENIC suggested that genes regulated by Th17 cell–specific TFs (Hif1a, Rora, and Nfkb1) and by Xbp1 were upregulated in cluster 2 (Th17 cells; ...

#46. Single-cell RNA-seq reveals transcriptional landscape and ...

Keywords: Gallbladder cancer (GBC); liver metastasis; single-cell ... As described previously, we use “SCENIC” R package (v.1.1.2-2) to infer gene ...

#47. 以single-cell RNA-seq数据推断基因调控网络和细胞功能聚类

SCENIC | 以single-cell RNA-seq数据推断基因调控网络和细胞功能聚类. 2020-03-30 00:40:26阅读5.4K评论1. 目前单细胞转录组领域用的比较多的细胞聚类方法大多是直接从 ...

#48. Evaluating the Reproducibility of Single-Cell Gene ... - HAL

These results are independent from the single-cell sequencing platform, ... SCENIC: single-cell regulatory network inference and clustering.

#49. 单细胞转录因子分析之SCENIC流程 - 知乎专栏

SCENIC (Single-Cell rEgulatory Network Inference and Clustering) is a computational method to infer Gene Regulatory Networks and cell types ...

#50. Role of Calcium Signaling Pathway-Related Gene Regulatory ...

Single -cell regulatory network inference and clustering (SCENIC) is used to analyse transcription factors (TFs) for identifying gene ...

#51. Single-Nucleus and In Situ RNA–Sequencing Reveal Cell ...

Second, we applied single-cell regulatory network inference and clustering (SCENIC) to infer TF-target regulatory networks (regulons) from ...

#52. Single-cell RNA-seq analysis reveals BHLHE40-driven ... - Gut

Analysis of upstream regulators revealed that BHLHE40 drives neutrophils towards pro-tumour phenotype · SCENIC · To further validate the regulatory effects of ...

#53. Single-Cell Analysis of the Pan-Cancer Immune ...

Our single-cell pan-cancer analysis and scTIME portal will provide more ... In brief, SCENIC groups the target genes regulated by a TF as a regulon and ...

#54. Single-cell RNA-seq reveals developmental plasticity with ...

Using single-cell RNA-sequencing, Anand and colleagues char. ... and signaling pathway activities were analyzed with SCENIC23 and PROGENy. 24 ...

#55. SCENIC: single-cell regulatory network inference and ... - X-mol

We present SCENIC, a computational method for simultaneous gene regulatory network reconstruction and cell-state identification from ...

#56. 单细胞转录因子分析之SCENIC流程 - 生信菜鸟团

SCENIC (Single-Cell rEgulatory Network Inference and Clustering) is a computational method to infer Gene Regulatory Networks and cell types ...

#57. Integrative exploration of the mutual gene signatures and ...

Single -cell regulatory network inference and clustering (SCENIC) analysis was performed on luminal and basal epithelial cells from different ...

#58. Scenic Round Trip Silverton Train - Official Durango ...

There's no cell service or Wi-Fi throughout the Animas Canyon so you'll be unplugged from the modern world. Soak in the views, listen as the steam whistle ...

#59. Basic Information - Zion National Park (U.S. National Park ...

... Utah You may drive yourself on all open park roads except the Zion Canyon Scenic Drive. During most of the year, the Scenic Drive is accessed by shuttle ...

#60. Single & Multi-Day Lift Tickets - Mammoth Mountain

Enjoy a scenic ride to the top on the Panorama Gondola located across from Main Lodge. Up to 2 kids (ages 12 & under) ride free with each paying adult.

#61. Comprehensive analysis of arachidonic acid metabolism ...

... acid metabolism-related genes in diagnosis and synovial immune in osteoarthritis: based on bulk and single-cell RNA sequencing data.

#62. 2075 Scenic Gulf Dr 3, MIRAMAR BEACH Property Listing

1-800-277-0801. 1 of 1 - 2075 Scenic Gulf Dr 3, MIRAMAR BEACH, FL ... Sub-Type, Attached Single Unit ... Cell: 850-865-3010.

#63. Camping - Banff National Park - Parks Canada

The sites have full three-way hook-ups and are either single or shared ... this rustic, no-service campground has scenic sites available for ...

#64. Single-cell RNA-seq: Analysis and interpretation of user and ...

In this 90-minute training, attendees will learn how to analyze and interpret their own single - cell RNA-seq (scRNA-seq) data as well as ...

#65. Ford Electric Vehicles | Charging, Range, Technology & More

The amount of your tax savings will depend on your individual tax circumstances ... A 2022 Ford F-150® LightningTM parked on rocks in a scenic location with ...

#66. United States Road Symbol Signs - FHWA MUTCD

... Guide Sign "NATIONAL SCENIC BYWAYS MARKER (D6-4)" is shown as ... THE COLORED SQUARES AID ROADWAY USERS IN, empty cell ...

#67. Children and childcare - Understanding Universal Credit

Who has main responsibility is largely the same as for other benefits and tax credits. In general, if you are able to claim Child Benefit for a child then they ...

#68. Art.com | Wall Art: Framed Prints, Canvas Paintings, Posters ...

hp-featured-collection_0301_sbc-9-scenic. EXPAND. The Art.com Promise. No flashy sales or promo code hunting here! We offer the best prices, every single ...

#69. Codes And Manuals - Ministry of Railways (Railway Board)

This is the Portal of Indian Railways, developed with an objective to enable a single window access to information and services being provided by the various ...

#70. Roadway Activity Report for parts of East and Middle ... - TN.gov

... single lane closures from US 70 from Access Road to Bullard Road. ... Drivers should never tweet, text, or talk on a cell phone while ...

#71. GIS Mapping - ArcGIS

Please enter a search term. Zoom in. Zoom out. Reset map orientation. Find my location. Start tracking my location. Basemap. Imagery. Imagery Hybrid.

#72. Welcome to the San Clemente Municipal Golf Course

Shared carts are $20 per rider; single riders will be charged an additional $10. ... The San Clemente Municipal Golf Club is a scenic, family friendly ...

#73. Banning books isn't the answer, Democrats against ...

I didn't see a single cell phone being stared at! The breakfast, soups-to-go, and baked goods were all delightful.

#74. Best cycling apps 2023 | 21 iPhone and Android apps for cyclists

... interface that allows you to start recording with a single tap, ... for 50+ miles through some of NJ's most scenic and well paved roads.

#75. Westmoreland State Park

In addition to scenic beauty, the park offers hiking, camping, cabins, fishing and ... There's limited cell phone service in the park.

#76. Control anger before it controls you

... and you think of a coworker as a “dirtbag” or a “single-cell life ... out a different route, one that's less congested or more scenic.

#77. Giancarlo De Carlo, Urbino, and the Collegi | SpringerLink

They are designed with varying dimension offsets, from the minimum ones of the single cells in the “Colle” to the more visible ones within ...

#78. Hanover Adventure Tours - CoolWorks.com - CoolWorks.com

... located in Norwich, Vermont on the scenic Connecticut River. ... We have a single, on site private room available for a live-in hostel manager position ...

#79. 105 Scenic Ridge Crescent NW Calgary, Alberta, T3L 1V3

MLS® A2031508, 105 Scenic Ridge Crescent NW Calgary, Price$874900.00, Bedrooms3, Bathrooms2, Sq.Ft.2289, Year Built1990, Type Residential.

#80. Howrah Municipal Corporation

It is a single-storied circular structure and is equipped with 10m FRP perforated ... Howrah has plenty of well-maintained scenic parks and green spaces.

#81. Find the best camping near me in the US. - Hipcamp

We have very limited cell service and no wifi on the property. ... A single camp spot on the top of a mountain surrounded by 160 acres of no one else!

#82. Angel Island Ferry | Golden Gate

Angel Island Ferry Fares & Tickets: ; Adult Single Ride (ages 19-64). $14.00 ; Clipper Adult, $9.00 ; Youth, Seniors, Disabled (with approved ID), or Medicare ...

#83. UC Davis | California's College Town

A scenic picture of Lake Tahoe at sunrise. 7. Fun Things to Do Outside of Davis · How UC Davis Is Growing a Tree Canopy for Tomorrow's Climate

#84. ENF List of Solar Companies and Products - Including Solar ...

We list all photovoltaic manufacturing companies, products and installers in the world - including solar panels, cells, production equipment and components.

#85. Seton Hill University Theatre Presents “Everybody”

Ticket Information: Single admission tickets are $15. ... Reeger at jreeger@setonhill.edu, (724) 830-1069 (office) or (724) 433-9613 (cell).

#86. Snow Tubing - Summit at Snoqualmie

Any individual on the tubing hill must have a ticket and signed a liability ... Please plan accordingly by calling 511 from your cell phone or checking our ...

#87. Getting Started with Seurat - Satija Lab

Analyze multimodal single-cell data with weighted nearest neighbor analysis in Seurat v4. Explore new methods to analyze pooled single-celled perturbation ...

#88. Integrative analysis of single-cell and/or bulk multi-omics ...

Scenic : single-cell regulatory network inference and clustering. Nat. Methods 14, 1083-1086. doi:10.1038/nmeth. 4463 Decamps, C., Privé, F., Bacher, R., ...

#89. Computational Methods for Precision Oncology

SCENIC : single-cell regulatory network inference and clustering. Nat Methods. 2017;14:1083–6. 46. Ma Y, et al. Integrative differential expression and gene ...